PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0230.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 210aa    MW: 23866.3 Da    PI: 10.1115
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.65.1e-30331332102
                             HHHHHHHHHC.........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS
            HSF_DNA-bind   2 Flkklyeile.........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 
                             Fl+k+++++e         +++ k+++sw+++gn f+v+ + ef++  Lp++F h+nf+SF+RQLn+YgFkk+++++         w
  SapurV1A.0012s0230.1.p  33 FLSKTFDLVEeggadgvagHPHGKRIVSWNAEGNGFIVWSPAEFSELTLPRFFNHNNFSSFIRQLNTYGFKKTSSKQ---------W 110
                             999*******777777777779***************************************************9988.........* PP

                             EEEESXXXXXXXXXXXXXXXXXX CS
            HSF_DNA-bind  80 eFkhksFkkgkkellekikrkks 102
                             eFkh++F kg+++ l +i rkk 
  SapurV1A.0012s0230.1.p 111 EFKHEKFLKGRRHILVEITRKKC 133
                             ********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3324126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.6E-3929131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-2530131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-2733131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAANILQLDQ GTAIKISSSS TVKSPKTKCP PPFLSKTFDL VEEGGADGVA GHPHGKRIVS  60
WNAEGNGFIV WSPAEFSELT LPRFFNHNNF SSFIRQLNTY GFKKTSSKQW EFKHEKFLKG  120
RRHILVEITR KKCEPSAFPA YLKASNQENA ARAIEETNRL ILMEENKNLR RENLELQIQI  180
AQFKALEMRL LDCLTQDMGT HQNKTRRLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-163113118120Heat shock factor protein 1
5d5v_D3e-16111314129Heat shock factor protein 1
5d5v_B3e-16111314129Heat shock factor protein 1
5d5u_B3e-16111314129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305140.21e-130hypothetical protein POPTR_0004s04260g
TrEMBLB9H2V91e-130B9H2V9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04260.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.11e-33heat shock factor 1